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It isn’t bad if you have a bunch of flatapaks as they share dependencies. For install the first install might be huge but the second app that also uses the same framework will be much smaller
Flatpaks require more storage space as all dependencies are combined in a flatpak. For me rather 2nd choice.
FYI: Flatpaks can share some dependencies and duplicate files.
They still use way more storage.
My entire distro + home + 30 appimages (which includes the equivalent flatpak applications as appimage) is
4.2 GiB
It isn’t bad if you have a bunch of flatapaks as they share dependencies. For install the first install might be huge but the second app that also uses the same framework will be much smaller